Por favor, use este identificador para citar o enlazar este ítem:
https://hdl.handle.net/20.500.12955/2054
Título : | Reference-Guided Draft Genome Assembly, Annotation and SSR Mining Data of the Peruvian Creole Cattle (Bos taurus) |
Autor : | Estrada Cañari, Richard Corredor Arizapana, Flor Anita Figueroa, Deyanira Salazar Coronel, Wilian Quilcate Pairazamán, Carlos Enrique Vásquez Pérez, Héctor Vladimir Maicelo Quintana, Jorge Luis Gonzales, Jhony Arbizu Berrocal, Carlos Irvin |
Fecha de publicación : | 9-nov-2022 |
Publicado en: | Data |
Resumen : | The Peruvian creole cattle (PCC) is a neglected breed and an essential livestock resource in the Andean region of Peru. To develop a modern breeding program and conservation strategies for the PCC, a better understanding of the genetics of this breed is needed. We sequenced the whole genome of the PCC using a de novo assembly approach with a paired-end 150 strategy on the Illumina HiSeq 2500 platform, obtaining 320 GB of sequencing data. A reference scaffolding was used to improve the draft genome. The obtained genome size of the PCC was 2.81 Gb with a contig N50 of 108 Mb and 92.59% complete BUSCOs. This genome size is similar to the genome references of Bos taurus and B. indicus. In addition, we identified 40.22% of repetitive DNA of the genome assembly, of which retroelements occupy 32.39% of the total genome. A total of 19,803 protein-coding genes were annotated in the PCC genome. For SSR data mining, we detected similar statistics in comparison with other breeds. The PCC genome will contribute to a better understanding of the genetics of this species and its adaptation to tough conditions in the Andean ecosystem. |
Palabras clave : | NGS Neglected breed Genome Reference scaffolding Microsatellites |
metadata.dc.subject.agrovoc: | High-throughput sequencing Breeds (animals) Genomes Microsatellites |
Editorial : | MDPI |
Citación : | Estrada, R.; Corredor, F.; Figueroa, D.; Salazar, W.; Quilcate, C.; Vásquez, H.; Maicelo, J.; Gonzales, J. & Arbizu, C. (2022). Reference-Guided Draft Genome Assembly, Annotation and SSR Mining Data of the Peruvian Creole Cattle (Bos taurus). Data 2022, 7, 155. doi: 10.3390/data7110155 |
URI : | https://hdl.handle.net/20.500.12955/2054 |
metadata.dc.identifier.doi: | https://doi.org/10.3390/data7110155 |
metadata.dc.subject.ocde: | https://purl.org/pe-repo/ocde/ford#4.03.01 |
Aparece en las colecciones: | Artículos científicos |
Ficheros en este ítem:
Fichero | Descripción | Tamaño | Formato | |
---|---|---|---|---|
Estrada-et-al_2022_Bos-taurus_Genome.pdf | 1,75 MB | Adobe PDF | Visualizar/Abrir |
Este ítem está sujeto a una licencia Creative Commons Licencia Creative Commons