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https://hdl.handle.net/20.500.12955/2054
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Campo DC | Valor | Lengua/Idioma |
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dc.contributor.author | Estrada Cañari, Richard | - |
dc.contributor.author | Corredor Arizapana, Flor Anita | - |
dc.contributor.author | Figueroa, Deyanira | - |
dc.contributor.author | Salazar Coronel, Wilian | - |
dc.contributor.author | Quilcate Pairazamán, Carlos Enrique | - |
dc.contributor.author | Vásquez Pérez, Héctor Vladimir | - |
dc.contributor.author | Maicelo Quintana, Jorge Luis | - |
dc.contributor.author | Gonzales, Jhony | - |
dc.contributor.author | Arbizu Berrocal, Carlos Irvin | - |
dc.date.accessioned | 2022-12-30T16:07:17Z | - |
dc.date.available | 2022-12-30T16:07:17Z | - |
dc.date.issued | 2022-11-09 | - |
dc.identifier.citation | Estrada, R.; Corredor, F.; Figueroa, D.; Salazar, W.; Quilcate, C.; Vásquez, H.; Maicelo, J.; Gonzales, J. & Arbizu, C. (2022). Reference-Guided Draft Genome Assembly, Annotation and SSR Mining Data of the Peruvian Creole Cattle (Bos taurus). Data 2022, 7, 155. doi: 10.3390/data7110155 | es_PE |
dc.identifier.uri | https://hdl.handle.net/20.500.12955/2054 | - |
dc.description.abstract | The Peruvian creole cattle (PCC) is a neglected breed and an essential livestock resource in the Andean region of Peru. To develop a modern breeding program and conservation strategies for the PCC, a better understanding of the genetics of this breed is needed. We sequenced the whole genome of the PCC using a de novo assembly approach with a paired-end 150 strategy on the Illumina HiSeq 2500 platform, obtaining 320 GB of sequencing data. A reference scaffolding was used to improve the draft genome. The obtained genome size of the PCC was 2.81 Gb with a contig N50 of 108 Mb and 92.59% complete BUSCOs. This genome size is similar to the genome references of Bos taurus and B. indicus. In addition, we identified 40.22% of repetitive DNA of the genome assembly, of which retroelements occupy 32.39% of the total genome. A total of 19,803 protein-coding genes were annotated in the PCC genome. For SSR data mining, we detected similar statistics in comparison with other breeds. The PCC genome will contribute to a better understanding of the genetics of this species and its adaptation to tough conditions in the Andean ecosystem. | es_PE |
dc.format | application/pdf | - |
dc.language.iso | eng | - |
dc.publisher | MDPI | en |
dc.relation.ispartofseries | Data | en |
dc.rights | info:eu-repo/semantics/openAccess | - |
dc.rights | Attribution-NonCommercial-NoDerivs 3.0 United States | - |
dc.rights.uri | http://creativecommons.org/licenses/by-nc-nd/3.0/us/ | - |
dc.source | Instituto Nacional de Innovación Agraria | es_PE |
dc.source.uri | Repositorio Institucional - INIA | es_PE |
dc.subject | NGS | en |
dc.subject | Neglected breed | en |
dc.subject | Genome | en |
dc.subject | Reference scaffolding | en |
dc.subject | Microsatellites | en |
dc.title | Reference-Guided Draft Genome Assembly, Annotation and SSR Mining Data of the Peruvian Creole Cattle (Bos taurus) | en |
dc.type | info:eu-repo/semantics/article | - |
dc.subject.ocde | https://purl.org/pe-repo/ocde/ford#4.03.01 | - |
dc.publisher.country | CH | - |
dc.identifier.doi | https://doi.org/10.3390/data7110155 | - |
google.citation.volume | 7 | - |
google.citation.issue | 11 | - |
dc.subject.agrovoc | High-throughput sequencing | en |
dc.subject.agrovoc | Breeds (animals) | en |
dc.subject.agrovoc | Genomes | en |
dc.subject.agrovoc | Microsatellites | en |
Aparece en las colecciones: | Artículos científicos |
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Fichero | Descripción | Tamaño | Formato | |
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Estrada-et-al_2022_Bos-taurus_Genome.pdf | 1,75 MB | Adobe PDF | Visualizar/Abrir |
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