Examinando por Materia "Metabarcoding"

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Metabarcoding reveals rhizosphere microbiome differences in healthy and basal rot-affected dragon fruit plants
(Elsevier B.V., 2026-02-18) Guelac Santillan, Marly; Fernandez Castro, Paul; Huaman Pilco, Angel F.; Estrada Cañari, Richard; Rodríguez Grados, Pedro; Arbizu, Carlos I.
The rhizosphere microbiome plays a crucial role in plant health, yet its dynamics in Selenicereus megalanthus (yellow dragon fruit) remain poorly understood. This study employed high-throughput sequencing to characterize the bacterial and fungal communities in the rhizosphere of healthy and basal rot-affected plants across four commercial production sites in Amazonas department from Peru. Amplicon sequencing Metagenomics Sequencing (WOBI) targeting to 16S rRNA (for bacteria) and ITS (for fungi) gene regions show differences in microbial community structure associated with plant health status. Multivariate analyses revealed a clear disease-driven reassembly of the bacterial microbiome, marked by the loss of health-associated taxa (Xanthobacteraceae, Geminicoccaceae, Nocardioidaceae) and enrichment of oligotrophic and stress-tolerant groups (Nitrososphaeraceae, Acidobacteriaceae Subgroup 1). In contrast, fungal assemblages displayed structural inertia, responding primarily through pathogen-associated increases in Nectriaceae. Soil physicochemistry particularly pH, exchangeable aluminum, and nutrient levels modulated the strength of bacterial differentiation, highlighting the role of edaphic filters in microbiome resilience. Our findings provide evidence of a bacterial-centered dysbiosis associated with basal stem rot in S. megalanthus, while positioning fungal communities as structurally resilient components of the holobiont. Together, these results outline a framework in which disease is linked to altered plant microbe soil feedbacks rather than pathogen presence alone, and suggest that bacterial assemblages could inform the development of microbiome-based early-warning indicators and soil health strategies for sustainable dragon fruit management.
Parasitism-induced changes in microbial eukaryotes of Peruvian alpaca gastrointestinal tract
(MDPI, 2024-01-27) Sanchez, Diana; Zapata Coacalla, Celso; Romero Avila, Yolanda; Flores Huarco, Nils Herber; Oros, Oscar; Alvarado Chuqui, Wigoberto; Quilcate Pairazamán, Carlos Enrique; Guevara Alvarado, Hada María; Estrada Cañari, Richard; Coila Añasco, Pedro Ubaldo
Alpacas, important genetic resources in the Andean region of Peru, are vulnerable to diarrhea caused by pathogenic parasites such as Eimeria lamae and Giardia sp., which can be fatal, especially in neonates, due to their physiological immaturity and limited adaptability. The study investigated the diversity and abundance of intestinal fungi and protists in alpacas infected with Eimeria lamae and Giardia sp. compared to healthy alpacas. A total of 19 alpacas, aged between one and two months, were included. They were divided into two groups, one with pathological conditions (nine) and the other healthy (ten). Parasitological analyses for the detection of parasites and subsequent molecular analysis were performed on the collected fecal samples. The results revealed a greater diversity and abundance of protists in infected alpacas in comparison with healthy alpacas, while the fungal composition did not show significant changes. Therefore, parasitic infections affect the protist component of the alpaca gut microbiota. Also, it was observed that Blastocystis was identified in all healthy alpacas, serving as a possible marker of the health of the intestinal microbiota; in addition, Prussia and Pichia are beneficial fungi that help control diseases. This groundbreaking study in neonatal alpacas is the first to explore potential changes in the intestinal microbiota during an infectious state, underscoring the importance of further research to comprehend its effects on alpaca health and immune responses.