The complete mitochondrial genome of a Peruvian creole cattle (Bos taurus) and its phylogenetic analysis

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dc.contributor.authorArbizu Berrocal, Carlos Irvin
dc.contributor.authorFerro Mauricio, Rubén Darío
dc.contributor.authorChávez Galarza, Julio César
dc.contributor.authorVásquez Pérez, Héctor Vladimir
dc.contributor.authorMaicelo Quintana, Jorge Luis
dc.contributor.authorPoemape Tuesta, Carlos Augusto
dc.contributor.authorGonzáles, J.
dc.contributor.authorQuilcate Pairazamán, Carlos Enrique
dc.contributor.authorCorredor Arizapana, Flor Anita
dc.date.accessioned2023-08-29T14:28:37Z
dc.date.available2023-08-29T14:28:37Z
dc.date.issued2023-02-09
dc.description.abstractThe population of Peruvian creole cattle (PCC) is decreasing mainly due to the introduction of more productive breeds in recent years. We report the complete mitochondrial genome sequence of a PCC bull for the first time. This genome was 16,339 bp in length with the base composition 31.43% A, 28.64% T, 26.81% C, and 13.12% G. It contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes and a control region. Among the 37 genes, 28 were positioned on the H-strand and 9 were positioned on the L-strand. The most frequently used codons were CUA (Leucine), AUA (Isoleucine), AUU (Isoleucine), AUC (Isoleucine) and ACA (Threonine). Maximum likelihood analysis clearly demonstrated that PCC are strongly related to a native African breed, giving insights into the maternal ancestry of PCC. The annotated mitochondrial genome of PCC would serve as an important genetic data set for further breeding work and conservation strategies.en
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dc.identifier.citationArbizu, C. I.; Ferro-Mauricio, R. D.; Chávez-Galarza, J. C.; Vásquez, H. V.; Maicelo, J. L.; Poemape, C.; ... & Corredor, F. A. (2022). The complete mitochondrial genome of a Peruvian creole cattle (Bos taurus) and its phylogenetic analysis. In Veerkamp, R.F.; & De Haas Y. (Eds.), Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP) Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges. Wageningen Academic Publishers, 1114-1117. doi: 10.3920/978-90-8686-940-4_264en
dc.identifier.doihttps://doi.org/10.3920/978-90-8686-940-4_264
dc.identifier.isbn978-90-8686-940-4
dc.identifier.urihttps://hdl.handle.net/20.500.12955/2255
dc.language.isoeng
dc.publisherWageningen Academic Publishersen
dc.publisher.countryNL
dc.rightsinfo:eu-repo/semantics/openAccess
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/
dc.sourceInstituto Nacional de Innovación Agrariaes_PE
dc.source.uriRepositorio Institucional - INIAes_PE
dc.subjectMitocondrialen
dc.subjectGenomeen
dc.subjectCattleen
dc.subjectBos Taurusen
dc.subjectPhylogenetic analysisen
dc.subject.agrovocPhylogenetic analysisen
dc.subject.agrovocAnálisis filogenéticoes_PE
dc.subject.agrovocGenomesen
dc.subject.agrovocGenomases_PE
dc.subject.agrovocBos taurusen
dc.subject.ocdehttps://purl.org/pe-repo/ocde/ford#4.02.01
dc.titleThe complete mitochondrial genome of a Peruvian creole cattle (Bos taurus) and its phylogenetic analysisen
dc.typeinfo:eu-repo/semantics/conferenceObject

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