The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast

dc.contributor.authorSaldaña, Carla L.
dc.contributor.authorChura Llanos, Luz S.
dc.contributor.authorEstrada Cañari, Richard
dc.contributor.authorFernandez Huaytalla, Elizabeth
dc.contributor.authorZirena Vilca, Franz
dc.contributor.authorGuerrero Abad, Juan Carlos
dc.contributor.authorAmasifuen Guerra, Carlos Alberto
dc.contributor.authorGutierrez Reynoso, Dina Lida
dc.contributor.authorInjante Silva, Pedro Hugo
dc.contributor.authorArbizu, Carlos I
dc.date.accessioned2025-03-31T05:21:38Z
dc.date.available2025-03-31T05:21:38Z
dc.date.issued2024-12-04
dc.descriptionThe article is a preprint, it is important to consider that it is not peer-reviewed
dc.description.abstractOlive (Olea europaea Linaeus 1753) is one of the valuable fruit trees and very important edible oil plant in the world. The chloroplast (cp) genome of an olive tree (Olea europaea) from the southern Peruvian arid coast was obtained for the first time. Genomic DNA of high quality was used to generate librarieswith Illumina Hiseq paired-end methods. The cp genome is 155,886 pb in length and contains a large single-copy region (LSC) of 86,610 pb and a small single copy region (SSC) of 17,790 pb separated by two inverted repeat (IR) regions (25,741bp). The cp genome of olive contains 124 genes that consists of 80 protein-coding genes, 36 tRNA, eight rRNA. Phylogenetic analysis showed this olive tree is sister to O. europaea subsp. maroccana ( Oleeae tribe). This study presents the first overview of the chloroplast genome organization and phylogenetics of O. europaea, offering valuable insights for genetic and evolutionary research in the genus Olea.
dc.description.sponsorshipThis research was funded by "Universidad Nacional de Moquegua". C.L.S. and C.I.A. were funded by "Programa Presupuestal No. 068" of the Peruvian Government. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
dc.formatapplication/pdf
dc.identifier.citationSaldaña CL, Chura-Llanos LS, Estrada R et al. The complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast [version 1; peer review: awaiting peer review] F1000Research 2024, 13:1478
dc.identifier.doihttps://doi.org/10.12688/f1000research.155147.1
dc.identifier.urihttp://hdl.handle.net/20.500.12955/2693
dc.language.isoeng
dc.publisherF1000Research
dc.publisher.countryGB
dc.relation.ispartofseriesF1000Research
dc.rightsinfo:eu-repo/semantics/openAccess
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/
dc.sourceInstituto Nacional de Innovación Agraria
dc.source.uriRepositorio Institucional - INIA
dc.subjectplastome
dc.subjectNGS
dc.subjectcoastal zone
dc.subjectphylogenomics
dc.subject.agrovocOlea europea; Olive tres; Chloroplasts; Genome analysis; Phylogeny; Genetics
dc.subject.ocdehttps://purl.org/pe-repo/ocde/ford#4.01.01
dc.subject.ocdehttps://purl.org/pe-repo/ocde/ford#4.01.04
dc.titleThe complete chloroplast genome of a centennial olive tree (Olea europaea, Oleaceae) from the southern Peruvian coast
dc.typeinfo:eu-repo/semantics/preprint

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